Accepted submissions SWAT4HCLS 2024

Oral presentations

3	Exploring the Role of Generative AI in Constructing KnowledgeGraphs for Drug Indications with Medical Context	Reham Alharbi, Umair Ahmed, Daniil Dobriy, Weronika Łajewska, Laura Menotti, Mohammad Javad Saeedizade, Michel Dumontier
5	SPHN strategy to unravel the semantic drift between versions of standard terminologies	Deepak Unni, Vasundra Touré, Philip Krauss, Katrin Crameri, Sabine Österle
6	Representation and comparison of chemotherapy protocols with ChemoKG and graph embeddings	Jong Ho Jhee, Alice Rogier, Dune Giraud, Emma Pinet, Brigitte Sabatier, Bastien Rance, Adrien Coulet
11	SPARQL Generation: an analysis on fine-tuning OpenLLaMA for Question Answering over a Life Science Knowledge Graph	Ana Claudia Sima, Julio C. Rangel, Tarcisio Mendes de Farias, Norio Kobayashi
14	Bridging Clinical and Genomic Knowledge: An Extension of the SPHN RDF Schema for Seamless Integration and FAIRification of Omics Data	Eelke van der Horst, Deepak Unni, Femke C. Kopmels, Jan Armida, Vasundra Touré, Wouter Franke, Katrin Crameri, Elisa Cirillo, Sabine Österle
15	Explaining Graph Neural Network Predictions for Drug Repurposing	Julie Loesch, Yang Yang, Pelinsu Ekmekci, Michel Dumontier, Remzi Celebi
19	Extracting shapes from large RDF data collections	Daniel Fernández-Álvarez, Yasunori Yamamoto, Jose Emilio Labra-Gayo, Andra Waagmeester
31	Unlocking Semantics as a FAIR Implementation Profile. Reflections and Lessons Learned Building User-centric Semantic Authoring Applications	Selena Baset, Didier Clement
39	Automated drug repurposing workflow for rare diseases	Carmen Reep, Katherine Wolstencroft, Eleni Mina, Núria Queralt-Rosinach
24	Applying the RDA Data Maturity Model on the Core Dataset of the German Medical Informatics Initiative (short presentation)	Lea Michaelis, Esther Thea Inau, Michael Rusongoza Muzoora, Judith A.H. Wodke, Thomas Ganslandt, Sylvia Thun, Dagmar Waltemath
32	A metadata profile to promote Real-World Data discoverability (short presentation)	Emiliano Reynares, Andrea Splendiani, Hanne van Ballegooijen
18	Refining SemOpenAlex Concept Ontology: A Constraint-Aware Approach via Knowledge Graph Embeddings and SKOS Constraints	Özge Erten, Shervin Mehryar, Bo Xiong, Remzi Çelebi, Christopher Brewster
40	Analyzing SPARQL Query Logs: A Study on Schema Coverage and Query Content	Maryam Mohammadi, Michel Dumontier
58	Ontology Enhanced FAIR Data Point Searches (short presentation, also see demonstrations)	Xiaofeng Liao, Coos Baakman, Kees Burger, Luiz Bonino da Silva Santos, Peter ‘t Hoen
17	Take CARE of your patient data. Clinical And Registry Entries (CARE) Semantic Model (short presentation, also see demonstrations)	Pablo Alarcón-Moreno, Mark Wilkinson

Demonstrations

16	LARA – embracing almost fully automated experimentation from ground up by using semantic web technologies in Life Sciences	Mark Doerr, Stefan Born
26	Linked Data Host – Simple Tools To Serve Clusters of Linked Data	Eric Prud’hommeaux, Andra Waagmeester
58	Ontology Enhanced FAIR Data Point Searches	Xiaofeng Liao, Coos Baakman, Kees Burger, Luiz Bonino da Silva Santos, Peter ‘t Hoen
17	Take CARE of your patient data. Clinical And Registry Entries (CARE) Semantic Model	Pablo Alarcón-Moreno, Mark Wilkinson

Posters

22	Frugal FAIR Data Point: A Document-Based Implementation for Enhanced Interoperability and Accessibility	Sunil Rodger, Eric Prud’hommeaux, Rajaram Kaliyaperumal, Egon Willighagen, Adrian Tassoni, Luiz Bonino, Wolmar Akerstrom, Andra Waagmeester
28	BioDataFuse: Enhancing Data Interoperability through Modular Queries and Knowledge Graph Construction	Tooba Abbassi-Daloii, Yojana Gadiya, Ammar Ammar, Egon Willighagen, Ana Claudia Sima, Hasan Balci
37	Personalized Medicine Through Personal Data Pods	Elias Crum, Ruben Taelman, Bart Buelens, Gokhan Ertaylan, Ruben Verborgh
38	Designing a FAIRification game for Research Software	Rohitha Ravinder, Dhwani Solanki, Claudio Carta, Bruna dos Santos Vieira, Johannes Keller, Marco Roos, Leyla Jael Castro
41	Causal Discovery on Health-related Quality of Life of cancer patients	Maria Ganopoulou, Efstratios Kontopoulos, Konstantinos Fokianos, Lefteris Angelis, Ioannis Kotsianidis, Theodoros Moysiadis
42	CHIST-ERA Triple: improving data interoperability and federation across RDF knowledge graphs and Solid Pods	Jerven Tjalling Bolleman, Elias David Crum, Iulian Dragan, Jakub Galgonek, Mark Ibberson, Tarcisio Mendes de Farias, Marek Moos, Marco Pagni, Ruben Taelman, Jiri Vondrasek, Ana Claudia Sima
43	Updating The SynthDNASim tool to create a diverse DNA dataset	Caitlin Jenster, Rick Overkleeft, Núria Queralt Rosinach
44	FAIR for automatic federated omics analysis	Daphne Wijnbergen, Georgios Malamas, Marco Roos, Eleni Mina
45	Traditional and Semantic ETL Approaches within DATOS-CAT Project: Adherence to FAIR Principles in Healthcare Data Standardization	Judith Martinez-Gonzalez, Guillem Bracons Cucó, Aikaterini Lymperidou, Xavier Escribà-Montagut, Marta Huertas, Ramon Mateo-Navarro, David Sarrat-González, Santiago Frid, Rafael de Cid, Juan Ramón González, Alberto Labarga
46	OMOP-CDM mapping to RDF/OWL: Attempting to bridge the OHDSI ecosystem and the Semantic Web world	Achilleas Chytas, Nick Bassiliades, Pantelis Natsiavas
47	OpenPVSignal Knowledge Graph: An openly available data source for pharmacovigilance signal reports	Achilleas Chytas, Pantelis Natsiavas
48	FAIR Service Descriptions:enriching life science SPARQL endpoints	Jerven Bolleman, Alan Bridge, Nicole Redaschi
49	Integration of variation data through SPARQLMicro-Services	Frederic Metereau, Franck Michel, Pierre Larmande, Guilhem Sempere, Catherine Faron
50	Nanosafety data made interoperable using semantic modeling and linked-data knowledge graphs	Ammar Ammar, Egon Willighagen
51	Representing bioinformatics Nextflow workflows in RO-Crate : challenges and opportunities	George Marchment, Marie Schmit, Clémence Sebe, Frédéric Lemoine, Hervé Menager, Sarah Cohen-Boulakia
52	The approach of IQVIA to ontologies for healthcare and life sciences	Andrea Splendiani, Emiliano Reynares, Anthony Reckard
53	MLentory, a metadata registry for machine learning models	Dhwani Solanki, Nelson Quiñones, Dietrich Rebholz-Schuhmann, Leyla Jael Castro
54	There and back again: RDF as a bridge to domain-platforms like OMERO	Josh Moore, Andra Waagmeester, Hettne Kristina, Katherine Wolstencroft, Susanne Kunis
55	MeDaX Prototype v0.2	Ilya Mazein, Sarah Braun, Tom Gebhardt, Ron Henkel, Lea Michaelis, Dagmar Waltemath, Judith Wodke
56	A Semantic Design for the Biological Processes Associated with Intrinsically Disordered Proteins	Atsuko Yamaguchi, Yumiko Kado, Shigetaka Sakamoto, Satoshi Fukuchi, Motonori Ota
57	Make RDF data more inter-connectable.	Yasunori Yamamoto, Takatomo Fujisawa
59	FAIR Data Cube, a FAIR data infrastructure for integrated multi-omics data analysis	Xiaofeng Liao, Anna Niehues, Casper de Visser, Junda Huang, Thomas Ederveen, Cenna Doornbos, Purva Kulkarni, K. Joeri van der Velde, Morris Swertz, Martin Brandt, Alain van Gool, Peter ‘t Hoen
60	FAIR Software as a Service: Combining tools to implement FAIR for clinical data platforms	Rick Overkleeft, Sander van Boom, Eric Prud’Hommeaux, Kees Burger, Jip Fransen, Teus Kappen, Luiz Bonino da Silva Santos, Rajaram Kaliyaperumal, Marco Roos
12	Application of the RDF framework to integrate heterogenous experimental data of a large chemo- and biodiverse collection from a research collaborative project	Frederic Burdet, Pierre-Marie Allard, Louis-Felix Nothias, Olivier Kirchhoffer, Arnaud Gaudry, Sebastien Moretti, Robin Engler, Luis-Manuel Quiros-Guerrero, Emerson Ferreira Queiroz, Jahn Nitschke, Nabil Hanna, Chunyan Wu, Antonio Grondin, Bruno David, Thierry Soldati, Christian Wolfrum, Erick Carreira, Jean-Luc Wolfender, Marco Pagni, Florence Mehl
61	Vision for modular taxonomy production at Elsevier: The VOICE project	Wytze Vlietstra, Matthias Albus, Nick Drummond, Simon Jupp, George Georghiou
25	Achieving data FAIRification in a distributed analytics research platform for rare diseases	Anna Bernasconi, Cinzia Cappiello, Stefano Ceri, Pietro Pinoli
4	Temporal Data Modeling Evaluation in Knowledge Graphs: A Healthcare Use Case	Sepideh Hooshafza, Gaye Stephens, Mark.A Little, Beyza Yaman
10	Recognition of Biodiversity-related Named Entities by Fine-tuning General-domain BERT-based Language Models	Geilah Tabanao, Andrew Miguel Pagdanganan, Riza Batista-Navarro, Roselyn Gabud
13	INDEX: the Intelligent Data Steward Toolbox utilizing Large Language Model embeddings for automated data harmonization	Tim Adams, Mohamed Sankt Augustin, Yasamin Salimi, Holger Fröhlich, Marc Jacobs
20	Machine learning interpretability methods to characterize brain network dynamics in epilepsy	Dipak Upadhyaya, Katrina Prantzalos, Suraj Thyagaraj, Nassim Shafiabadi, Guadalupe Fernandez-BacaVaca, Subhashini Sivagnanam, Amitava Majumdar, Satya Sahoo
21	Personalised Medical Content Delivery to Support Patient Empowerment based on Knowledge Graphs	Christine Kakalou, Christina Karamanidou, Theodore Dalamagas, Manolis Koubarakis
35	Construction of a knowledge graph for food health claims	Remzi Celebi, Ilse van Lier, Alie de Boer, Michel Dumontier