Semantic Web Applications and Tools for Healthcare and Life Sciences
SWAT4HCLS 2022

Recordings

Day 2 – January 12th 2022

Welcome and introduction

https://slideslive.com/38975633

Keynote

Prof Karin Verspoor – Chair: Marco Roos
https://slideslive.com/38975634

Presentations: Semantic Web and FAIR Health

Chair Rianne Fijten – Co-chair Núria Queralt Rosinach

Sabine Oesterle, Vasundra Touré and Katrin Crameri, The SPHN Ecosystem towards FAIR Data
https://slideslive.com/38975639

Ruduan Plug, Yan Liang, Mariam Basajja, Aliya Aktau, Putu Jati, Samson Amare, Getu Taye, Mouhamad Mpezamihigo, Francisca Oladipo and Mirjam van Reisen: FAIR and GDPR Compliant Population Health Data Generation, Processing and Analytics
https://slideslive.com/38975640

Deepak Sharma, Eric Prud’hommeaux, David Booth, Kevin Peterson, Daniel Stone, Harold Solbrig, Guohui Xiao, Emily Pfaff and Guoqian Jiang, Implementing a New FHIR RDF Specification for Semantic Clinical Data Using a JSON-LD-based Approach
https://slideslive.com/38975641

Mercedes Arguello-Casteleiro, Chloe Henson, Nava Maroto, Saihong Li, Julio Des-Diz, Maria Jesus Fernandez-Prieto, Simon Peters, Timothy Furmston, Carlos Sevillano-Torrado, Diego Maseda-Fernandez, Manoj Kulshrestha, John Keane, Robert Stevens and Chris Wroe, MetaMap versus BERT models with explainable active learning: ontology-based experiments with prior knowledge for COVID-19
https://slideslive.com/38975642

Online poster pitches for Posters in Group 1

Chair Andrea Splendiani – Co-chair Andra Waagmeester

https://slideslive.com/38975643

Gathertown Poster Session

Chair Bruna Dos Santos Viera – Co-chair Martijn Kersloot

Keynote

Dr. Martina Summer-Kutmon, Chair Andra Waagmeester  – Co-chair Chris Baker.
https://slideslive.com/38975644

Invited Talk

FAIR Agronomy where are we, The KnetMiner Use Case, Marco Brandizi and Keywan Hassani-Pak, Introduced by Chris Baker.
https://slideslive.com/38975645

Presentation session 2 – Knowledge Graphs

Chair: M. Scott Marshall – Co-chair Shuxin Zhang.

Alasdair Gray, Petros Papadopoulos, Ivan Mičetić and András Hatos, Creating and Exploiting the Intrinsically Disordered Protein Knowledge Graph (IDP-KG)
https://slideslive.com/38975650

Helena Balabin, Charles Hoyt, Benjamin M. Gyori, John Bachman, Alpha Tom Kodamullil, Martin Hofmann-Apitius and Daniel Domingo-Fernández, ProtSTonKGs: A Sophisticated Transformer Trained on Protein Sequences, Text, and Knowledge Graphs
https://slideslive.com/38975651

Vincenzo Daponte, Catherine Hayes, Julien Mariethoz and Frederique Lisacek, Glycan semantic model applications in substructure search
https://slideslive.com/38975656

Julie Loesch, Louis Meeckers, Ilse van Lier, Alie de Boer, Michel Dumontier and Remzi Celebi, Automated Identification of Food Substitutions Using Knowledge Graph Embeddings
https://slideslive.com/38975657

Panel session – Agri-semantics

Chair Chris Baker – Co-chair Scott Marshall.

https://slideslive.com/38975658

Day 3 – January 13th 2022

Presentations 3 Ontologies, Semantic Annotation and FAIR Standards

Chair Leyla Jael Garcia Castro - Co-chair Joeri van der Velde.

Chang Sun, Vincent Emonet and Michel Dumontier, A comprehensive comparison of automated FAIRness Evaluation Tools
https://slideslive.com/38975659

Fuqi Xu, Nick Juty, Carole Goble, Simon Jupp, Helen Parkinson and Mélanie Courtot, Features of a FAIR vocabulary
https://slideslive.com/38975660

Olga Giraldo, Miguel Ruano, Robin A. Richardson, Remzi Celebi, Michel Dumontier and Tobias Kuhn, Nanotate: Semantically annotating experimental protocols with nanopublications
https://slideslive.com/38975661

Frances Gillis-Webber and C. Maria Keet, A Survey of Multilingual OWL Ontologies in BioPortal
https://slideslive.com/38975663

Keynote

Prof Mirjam van Reisen, Chair Katy Wolstencroft, Co-chair Marco Roos.
https://slideslive.com/38975664

Online poster pitches group 2

Chair Andrea Splendiani – Co-chair Rutger Vos.

https://slideslive.com/38975665

Gathertown Poster Session

Chair Bruna dos Santos Vieira – Co-chair Martijn Kersloot.

Presentations session 4

Chair Rutger Vos – Co-chair Clémence le Cornec.

Ali Syed, Senay Kafkas, Maxat Kulmanov and Robert Hoehndorf, Using SPARQL to unify queries over data, ontologies, and machine learning models in the PhenomeBrowser knowledgebase
https://slideslive.com/38975666

Rajaram Kaliyaperumal, Gurnoor Singh, Núria Queralt-Rosinach, Jumamurat Bayjanov, Peter-Bram T Hoen and Marco Roos, Phenopackets for the Semantic Web
https://slideslive.com/38975667

César Bernabé, Núria Queralt-Rosinach, Vitor Souza, Luiz Santos, Annika Jacobsen, Barend Mons and Marco Roos, The use of Foundational Ontologies in Bioinformatics
https://slideslive.com/38975668

Keynote 4

Prof Amit Sheth, Chair: Chris Baker  – Co-chair Andrea Splendiani.
https://slideslive.com/38975669

Closing remarks and next SWAT4HCLS

Andrea Splendiani, Marco Roos, Rutger Vos, Scott Marshall, Katy Wolstencroft
https://slideslive.com/38975670